CDS

Accession Number TCMCG002C20573
gbkey CDS
Protein Id XP_020102074.1
Location join(<3578031..3578713,3579359..3579563,3580078..3580278,3582352..3582438,3582535..3582852)
Gene LOC109719702
GeneID 109719702
Organism Ananas comosus

Protein

Length 497aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA371634
db_source XM_020246485.1
Definition ribonuclease III domain-containing protein RNC1, chloroplastic, partial [Ananas comosus]

EGGNOG-MAPPER Annotation

COG_category A
Description Binds specific group II introns in chloroplasts and facilitates their splicing. Acts on both subgroup IIA and subgroup IIB introns. The substrates of the subgroup II also require the CRM domain proteins CAF1 or CAF2. Binds both single-stranded and double-stranded RNA non-specifically, but lacks endonuclease activity. Required for plastid ribosome biogenesis
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE -
KEGG_ko -
EC -
KEGG_Pathway -
GOs GO:0000373        [VIEW IN EMBL-EBI]
GO:0000375        [VIEW IN EMBL-EBI]
GO:0000377        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003725        [VIEW IN EMBL-EBI]
GO:0003727        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004518        [VIEW IN EMBL-EBI]
GO:0004519        [VIEW IN EMBL-EBI]
GO:0004521        [VIEW IN EMBL-EBI]
GO:0004525        [VIEW IN EMBL-EBI]
GO:0004540        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009532        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009570        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0014070        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016246        [VIEW IN EMBL-EBI]
GO:0016441        [VIEW IN EMBL-EBI]
GO:0016458        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016788        [VIEW IN EMBL-EBI]
GO:0016891        [VIEW IN EMBL-EBI]
GO:0016893        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0030422        [VIEW IN EMBL-EBI]
GO:0031047        [VIEW IN EMBL-EBI]
GO:0031050        [VIEW IN EMBL-EBI]
GO:0031053        [VIEW IN EMBL-EBI]
GO:0031054        [VIEW IN EMBL-EBI]
GO:0032296        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0035194        [VIEW IN EMBL-EBI]
GO:0035195        [VIEW IN EMBL-EBI]
GO:0035196        [VIEW IN EMBL-EBI]
GO:0040029        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0042254        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043331        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044434        [VIEW IN EMBL-EBI]
GO:0044435        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070887        [VIEW IN EMBL-EBI]
GO:0070918        [VIEW IN EMBL-EBI]
GO:0071310        [VIEW IN EMBL-EBI]
GO:0071359        [VIEW IN EMBL-EBI]
GO:0071407        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090501        [VIEW IN EMBL-EBI]
GO:0090502        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901698        [VIEW IN EMBL-EBI]
GO:1901699        [VIEW IN EMBL-EBI]

Sequence

CDS:  
AATCCCGCGATCGCCCAATACCTTTTCTTCGCCCGTCGCCGTGACCCCCCTCCCGAAGCCCCCCTCAACAGCCCCCAGCGCCTCCTCCGCGAGCTCGCCGAGCGCAAAAAGGTCGCCTTTCCCAAGAAGAAGACCCCCCCGCGGAGGTTCATCCTCAAACCCCCCTTGGACGACGCCAAATTGGCCGAGAGGTTCCTCAACAGCCCCCAACTGTCCCTAAAAACCTTCCCTTTGCTGAGCTCTTGCCTACCGTCTTCGCGGTTGAACAATGCCGATGCGACCTGGATCGGCGAGTACCTCCTCGAGGCGAAGCAGGCGCTCGGGTACCCGCTGGAGCCCTCCGAAGCGCTCGGCGACGACACCCCGGCGAAGCATTTCGACACCTTGCTGTACCTGGCGTTCCAGCACCCCACGGCCGAGGCCCGGACCACGGCGCGGCACGTGCGGAACGGGCACTCCAGGCTCTGGTTCCTGGGCCAGTACGTGATCGAGATGGCCTTCGCCGAGTTTTTCCTGCAGCGCTACCCGCGCGAGTCCCCTGGGCCGATGCGGGAGCGGGTGTACGCGCTCATCGGCAAGAGGTTCCTCCCTAAGTGGATCAAAGCCGCGAGCTTGCACAATTTGGTGTTCCCCTATGATGAGATGGATAAGTTGATCAGGAAGGATAGGGAGCCCCCTGTGAAATCTGTGTTCTGGGCAATATTTGGAGCTATATATCTGTGCTTTGGCTTGCCTGAAGTATATCGCGTCTTATTCGAGGCATTCGGAATGGATCCTGAAGACGAGAGTTCTCAACCAAAATTAAGACGGCAACTTGAAGATGTCGACTATGTATCGGTGGAGTTTGAAGGCCGACAGATCAGTTGGCAAGATGTTGCTGCGTACAAGCCTCCACAAGATGCACTTTTTGCACATCCGAGGCTTTTCAGGGCATGTGTCCCTCCAGGTATGCATCGTTTTCGAGGGAATATCTGGGACTTTGACCACAGGCCCAAGGTTATGAGAACTCTTGGATACCCTTTGCATATAAATGATCGGATCCCGGAAATCACGGAAGCCAGGAACATCGAATTTGGGCTTGGGCTTCAGCTGTGCTTTATGCATCCTTCGAAATACAAGTTTGAACATCCGCGATTTTGTTTTGAGCGGTTGGAATATGTTGGTCAAAAGATTCAGGATCTTGTGATGGCCGAGAGATTACTTATGAAGCATCTCGATGCTCCCGGGAGATGGTTGCAAGAGAAGCACCGCCGGACATTAATGAACAAATTTTGCGGGAGGTACTTAAGGGACAAGCACCTCCACCACTACATCATATACGGCGAGTCGGTCCAAGACAAATTCGAGCACAACCGGAGGCTCAGGAACCCAGCCACGACCTCTGTCCAGCAAGCGATTCACGGGCTCGCTTACATGGTCTATGGCAAGCCCGACGTCCGCCGATTGATGTTTGAGGTGTTTGATTTTGAACAAATCCAACCTAAAGCTGTGTGA
Protein:  
NPAIAQYLFFARRRDPPPEAPLNSPQRLLRELAERKKVAFPKKKTPPRRFILKPPLDDAKLAERFLNSPQLSLKTFPLLSSCLPSSRLNNADATWIGEYLLEAKQALGYPLEPSEALGDDTPAKHFDTLLYLAFQHPTAEARTTARHVRNGHSRLWFLGQYVIEMAFAEFFLQRYPRESPGPMRERVYALIGKRFLPKWIKAASLHNLVFPYDEMDKLIRKDREPPVKSVFWAIFGAIYLCFGLPEVYRVLFEAFGMDPEDESSQPKLRRQLEDVDYVSVEFEGRQISWQDVAAYKPPQDALFAHPRLFRACVPPGMHRFRGNIWDFDHRPKVMRTLGYPLHINDRIPEITEARNIEFGLGLQLCFMHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAPGRWLQEKHRRTLMNKFCGRYLRDKHLHHYIIYGESVQDKFEHNRRLRNPATTSVQQAIHGLAYMVYGKPDVRRLMFEVFDFEQIQPKAV